![]() ![]() ![]() This submenu contains commands for installing, running and recording macros, as well as any macro commandsĪdded by Plugins>Macros>Install. System.getProperties().setProperty("plugins.dir", "/users/wayne") This property can also be set in a program It will look for the plugins folder in the /Users/wayne/ directory. Java -Dplugins.dir=/Users/wayne -cp ij.jar ij.ImageJ For example, if you run ImageJ with the command This property can be set from either the command line or from within a Java program that starts The "plugins.dir" property specifies the location of the parent of the plugins directory. There will be a new Roi Manager command in the Plugins menu the next time you restart ImageJ. ![]() Run the new plugin using the editor's File>Compile and Run command.Change the first line from "package ij.ame " to "import ij.ame.* ".Open Roi_Manager.java using File>Open and change all instances (4) of "RoiManager" to "Roi_Manager".Change the file name to Roi_Manager.java.Copy ij/plugin/frame/RoiManager.java to the plugins folder.For example, to change the RoiManager (Analyze/Tools/ROI Manager) to a user plugin: You can convert an internal plugin to a user plugin by copying the source to the plugins folder,Īdding an underscore to the file name and class name, and changing the package statement toĪn import statement. You can use a ZIP utility to look at the contents of ij.jar. A JAR file (Java ARchive) is formatted the same as a ZIP file, so ( IJ_Props.txt) that ImageJ uses to install internal The ij.jar file, not in the plugins folder. Most commands in ImageJ are implemented as plugins but these internal plugins are located in ![]() There are also tutorials on how to use the Eclipse ( File>Open) to open an existing macro, script or plugin.Īvailable through the ImageJ Web site as well as more thanĪ tutorial for plugin writers is available at Use the commands in the New submenu to create new macros, scripts or plugins. The Recorder and it does not correctly convert some macro code. The Convert to Plugin command is only available in editor windows created by clicking on "Create" in Use the Edit>Convert to Plugin command in the editor to convert the macro to a plugin. Use the Recorder ( Macros>Record) to record a series of commands and to convert them to a macro. To assign a keyboard shortcut to a plugin or a macro. PluginsĪnd macros in subfolders of the plugins folder are listed in submenus. Plugins run faster and are more flexible but macros areĪnd macros in the plugins folder, with an underscore in their name,Īre listed at the bottom of this menu. The Java programming language and compiled to. Plugins and macros are loadable code modules that extend the capabilities of ImageJ. I will makeĪn effort to maintain backward compatibility, but there is no guarantee of this, so a backup copy should always be made before updating.Home | contents | previous | next Plugins Menu The individual user is responsible for updating. Updates for the plugins will be uploaded periodically. If you get an error that says "[S cannot be cast to [F" or "[B cannot be cast to [F" then you need to convert to 32-bit with Image>Type>32-bit. A common problem with my plugins is that most are written for 32-bit images with support added later for 16 and then 8 bit images. Note that these plugins are provided on an as is basis with no guarantees or support. Here is an excel worksheet with a list of plugins and a brief description: Plugins_List.xls. If you prefer github, I have a library there as well.Ī zipped documentation folder is here: Docs.zip. The source code can be accessed by opening the above jar files with any zip archive utility (e.g. I used to have the packages Jay_Plugins2.jar and Jay_Plugins3.jar but modern ImageJ supports a larger number of plugins so those plugins have been shifted into the Jay_Plugins package. For installation, simply copy this file to your plugins folder. You need to either manually change it to or reinstall a fresh copy of Fiji which should have the correct URL.Īll plugins can be downloaded as a jar file here: Jay_Plugins.jar. Note that due to recent server security updates, the former Fiji update site URL does not work. This is the recommended installation mechanism as it provides update reminders and will install dependencies. See the fiji help guide to follow the site with your copy of FIJI. By using this software, you are agreeing to the license agreement. Note: please read the License Information file for details about licensing and use. ![]()
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